Photo-coupled data acquisition system and method

ABSTRACT

The photo-coupled data acquisition system can have a container having a contour wall extending upwardly from a closed bottom, for containing a sample therein, a light emitter operable to emit diffused light into the container at an initial intensity, a photodetector operable to detect a reflected intensity of the diffused light, and a structure connected to the contour wall and holding the light emitter and the photodetector at a predetermined height above the bottom of the container and in an orientation facing inside the container, wherein during operation of the system, the initial light intensity is attenuated by the sample and the reflected intensity thereof can be correlated to an information value concerning a variable of interest of the sample.

FIELD

This specification concerns systems and methods which use photodetectionof a light signal attenuated by a sample to determine a value of avariable of interest of concerning the sample. For example, in oneembodiment, the attenuation of light as it travels across a samplehaving organisms in a water medium affects the detected intensity, whichcan thus be correlated to a value of a variable of interest such as anquantity, biomass, or activity level of the organisms, for instance.

SUMMARY

In accordance with one aspect, there is provided a photo-coupled dataacquisition system comprising a container having a contour wallextending upwardly from a closed bottom, for containing a sampletherein, a light emitter operable to emit diffused light into thecontainer at an initial intensity, a photodetector operable to detect areflected intensity of the diffused light reflected by at least one ofthe sample and the container across the sample, and a structureconnected to the contour wall and holding the light emitter and thephotodetector at a predetermined height above the bottom of thecontainer and in an orientation facing inside the container, whereinduring operation of the system, the initial light intensity isattenuated by the sample in a manner that the reflected intensity can becorrelated to an information value concerning a variable of interest ofthe sample.

In accordance with another aspect, there is provided a method ofobtaining a value of a variable of interest concerning a sample oforganisms in a liquid medium, the method comprising: placing a givenvolume of the sample in a container; emitting an initial intensity ofdiffused light onto the sample, the container receiving the diffusedlight and reflecting the diffused light through the sample, the samplethereby attenuating the initial intensity; measuring a reflectedintensity of the diffused light; and correlating the measured reflectedintensity to the variable of interest.

In accordance with another aspect, there is provided a method ofobtaining an information value concerning a variable of interest of asample having marine organisms in a water medium, the method comprising:exposing the sample having marine organisms in a water medium to adiffused light having an initial intensity, the sample therebyattenuating the light; obtaining at least one attenuated intensity valuecorresponding to an attenuated intensity of the light subsequently tosaid exposing; using the at least one attenuated intensity value toobtain the information value of the sample.

Wherein the variable of interest can be related to the biomass of themarine organisms in the sample, in which case said using includescorrelating the at least one attenuated intensity value to a biomass ofthe marine organisms.

Wherein the step of using can include obtaining an initial intensityvalue corresponding to the initial intensity, determining an attenuationvalue using both the attenuated intensity value and the initialintensity value, providing calibration data, and correlating theattenuation value to the information value of the variable of interestusing the calibration data.

Wherein the calibration data can be based on a calibration curveobtained using a plurality of samples of having known and varyingvariables of interest yielding a corresponding plurality of attenuationfactors.

Wherein said exposing can include emitting diffused light onto thesample.

Wherein an intensity value of ambient light can be obtained and theattenuated intensity values can be corrected based on the measuredambient light intensity value.

Wherein the at least one attenuated intensity values can be obtained fortwo distinct wavelength bands, in which case the step of using caninclude using at least one attenuated intensity value obtained for oneof the two distinct wavelength bands to obtain the information valuecorresponding to a first variable of interest; an attenuated intensityratio of corresponding values in the two distinct wavelength bands canbe correlated to obtain an information value corresponding to a secondvariable of interest; and the exposing includes emitting diffused lightonto the sample at initial intensities in the two distinct emissionwavelength bands.

Wherein the diffused light can be sunlight, in which case an initialintensity value is determined by measuring an ambient light intensityvalue, and the initial intensity value can be used to obtain theinformation value.

Wherein the at least one attenuated intensity value can be obtained bydetecting a reflected intensity of the light.

Wherein the at least one attenuated intensity value can be obtained bydetecting a transmitted intensity of the light.

Wherein the at least one attenuated intensity value can include aplurality of attenuated intensity values obtained at a regular rate overa given period of time, in which case the plurality of attenuatedintensity values can be analyzed to determine at least one frequency ofvariation of the plurality of attenuated intensity values during thegiven period of time, and the at least one frequency can include atleast two frequencies corresponding to two respective variables ofinterest of the sample.

Wherein the obtaining can include obtaining at least two attenuatedintensity values corresponding to an attenuated intensity of the lightsubsequently to said exposing, said at least two attenuated intensityvalues being obtained for different field of views, in which case the atleast two attenuated intensity values can be compared and an indicationof the size of the marine organisms can be obtained using saidcomparison.

One specific need occurred in the field of post-larvae shrimpproduction. In the shrimp industry, post-larvae shrimp are producedbefore being shipped to shrimp farms. The shrimp farms typically pay aprice for the post-larvae shrimp which depends on the quantity ofpost-larvae shrimp. There are very large numbers of post-larvae shrimpto count, and there remained a need for improved means to obtain atleast a satisfactory estimate of the number of post-larvae shrimp forthis purpose. There was thus a need for improved methods or systems forobtaining information concerning the biomass of marine organisms in aliquid medium.

In accordance with one aspect, there is provided a method of countingshrimp at the post-larvae stage of development, the method comprising:placing a sample of a given volume having the shrimp at the post-larvaestage in a water medium in an opaque container; emitting an initialintensity of diffused light onto the sample; measuring a reflectedintensity of the light; correlating the measured reflected lightintensity to an estimated number of shrimp, thereby counting the shrimp.

In accordance with still another aspect, there is provided a system forcounting shrimp, the system comprising a container for housing apredetermined volume of a sample containing the shrimp in a watermedium, the container further being opaque and preventing intrusion ofambient light, a diffused light emitter for emitting an initial lightintensity toward the sample in the container, and a photodetector fordetecting a reflected light intensity, the diffused light emitter andphotodetector being held at a predetermined height above the sample, anda processor to correlate the reflected light intensity to a number ofshrimp in the water medium.

An other specific need occurred in the field of fish farms, particularlyin open sea cages. One of the most major costs in fish production is thecost of the feed. The ratio of the amount of feed per pound of fishproduced is thus an important factor in successful fish production, andit is thus desirable to reduce the amount of feed used. Particularly inopen sea cages, it was difficult to efficiently and precisely determineat which moment to stop providing feed to the fish. It was common tofeed the fish with too much feed, and the excess amount of feed settledacross the open sea cage and past it, to be lost. There thus remained aneed for improved means to determine when to stop providing feed to opensea cages.

In accordance with another aspect, there is provided a method ofdetermining when to stop providing feed to a sample of fish swimming insea water and contained in an open sea cage, the method comprising:transmitting a diffused light having an initial intensity across thesample, the sample thereby attenuating the light; measuring plurality ofattenuated intensity values of the transmitted light, the attenuatedintensity values being obtained at a regular rate over a given period oftime; identifying a first frequency of variation of the plurality ofattenuated intensity values over the period of time corresponding to themovement of the fish; identifying a second frequency of variation of theplurality of attenuated intensity values over the period of timecorresponding to the movement of feed; and determining when to stopproviding feed based on a variation of the attenuated intensity valuescorresponding to the second frequency.

Wherein diffused light can be emitted and transmitted through the samplewithin a given chromatic wavelength band, and the step of measuring caninclude measuring the attenuated intensity values within a correspondingchromatic wavelength band.

Wherein an ambient light intensity value can be measured within thecorresponding chromatic wavelength band, and the attenuated intensityvalues can be corrected based on the measured ambient light intensityvalue.

Another specific need occurring in the field of open sea cages is theultimate goal of fish farmers to achieve optimal fish growth whileminimizing the consumption of expensive fish feed. Achieving the lowestfeed conversion ratio requires that the farmer has a good estimate ofthe total biomass of fish present in the ocean aquaculture cage. Knowingthe total fish biomass also enables the fish farm managers to performaccurate financial predictions related to fish stock, diminishinginvestment risks into the organization. It was common for fish farms tolose count of their fish stock after several months due to the lack ofinitial fish count assessment or high mortalities due to diseases orother environmental factors. There thus remained a need for improvedmeans to determine the total fish biomass in open sea cages.

In accordance with another aspect there is provided a method ofdetermining the biomass of fish including the number and the size offish contained in an open sea cage, the method comprising: transmittinga diffused light having an initial intensity across the sample, thesample thereby attenuating the light; measuring plurality of attenuatedintensity values of the transmitted light, the attenuated intensityvalues being obtained at a regular rate over a given period of time;identifying a first frequency of variation of the plurality ofattenuated intensity values over the period of time corresponding tosmaller fish; identifying a second frequency of variation of theplurality of attenuated intensity values over the period of timecorresponding to larger fish; and correlating the total attenuationvalues corresponding to larger fish to a fish number and the totalattenuation values corresponding to smaller fish to a fish number andsolving for the total number of fish in the cage.

Wherein more than two sampling frequencies can be used to assess thefish population size distribution

Wherein calibration algorithms that correlate attenuations valuesspecific to the system to units of fish biomass for different fishspecies can be developed.

Wherein an ambient light intensity value within the correspondingchromatic wavelength band can be measured, and the attenuated intensityvalues can be corrected based on the measured ambient light intensityvalue.

Wherein water turbidity value can be measured within the correspondingchromatic wavelength band, and the attenuated intensity values becorrected based on the measured turbidity value.

Many further features and combinations thereof concerning the presentimprovements will appear to those skilled in the art following a readingof the instant disclosure.

DESCRIPTION OF THE FIGURES

In the figures,

FIG. 1 is a view of a system for counting shrimps in accordance with afirst embodiment; and

FIG. 2 is a graph showing a correlation between attenuated intensity andamount of rotifers per ml;

FIG. 3 is a view showing a second embodiment of the system arranged onan open sea cage;

FIGS. 4A and 4B are graphs showing the isolation of frequenciesattributable to a variable of interest.

DETAILED DESCRIPTION

FIG. 1 shows an example of a photo-coupled data acquisition system 10which can be used for obtaining information on a sample 11 which canhave small marine organisms in a liquid medium for instance. In thisparticular example, the marine organisms can be shrimp, such as shrimpsat the post-larvae stage or Nauplii, lobster larvae, sturgeon eggs,young mussels, micro algae, Artemia, in a water medium, to name a fewexamples, whereas information can be the biomass thereof. In cases wherethe size of the organisms is known and relatively constant, the biomasscan be directly equated to a quantity of the organisms. Henceforth, thesystem 10 can be used for obtaining at least an estimation of thequantity of marine organisms in a water medium, prior to shipping forinstance.

In FIG. 1, the system 10 has a container 15 which can receive a givenvolume of a sample 11 of the organisms in the liquid medium. In thisexample, the given volume is large compared to the size of the organismsso that there are a large amount of organisms in the sample. This canstatistically allow to correlate the attenuation caused by the organismsin the container 15 to their biomass.

The system 10 can be seen to generally include an emitter 12 (lightsource) which can emit a diffused light onto the sample 11 at an initialintensity. The sample 11 attenuates the intensity of the light byscattering or absorbing the light, for instance. In this particularexample, the attenuation of the signal will be a function of the biomassof shrimp in the sample 11 and can also be a function of the turbidityof the water medium and/or volume of the sample, to name possiblevariables. The quality of the signal can be affected by ambient light,and so the sample is placed in an opaque container, which can be coveredby a removable opaque cover or lid 17 which both serves to form a closedvolume with the container 15 to prevent intrusion of ambient light andto form a structure which holds the emitter 12 at a predeterminedposition (orientation and height) relative to the sample 11 for thelight exposure configuration to be constant from one measure to another.

The container 15 has a contour wall 14 extending upwardly from a bottom16. The inner face of the contour wall and of the bottom is reflectivein this embodiment, in the sense that it can reflect the light emittedby the emitter 12 in a satisfactory manner. If reflection in more thanone wavelength band is desired, or for simplicity, a white or mirrorinner face can be selected. In the illustrated embodiment thecombination of opacity and reflectivity characteristics are obtained byhousing a white bucket 18 inside an opaque bucket 20 for example. Acomparable effect can be achieved using a sufficiently thick whitebucket and/or by painting or otherwise covering the inner face of thecontainer with a white or reflective layer, for instance.

The system 10 can also be seen to generally include a photodetector 22.The photodetector 22 can obtain a measure indicative of the intensity ofthe attenuated signal which is reflected back. The photodetector can usean amplified silicon photodiode for instance which can allow to convertlight intensity into voltage. It can be used in combination with a CCDlens for adaptability to distance and size of samples investigated.

The photo detector 22 is also held at a predetermined position(orientation and height) relative to the sample 11, by a structureformed by the lid 17, for the light exposure and detection configurationto be constant from one measure to another.

The use of a lid mounting locks the horizontal position (height) andorientation of the emitter 12 and photodetector 22 relative the sample11. However, the radial orientation at which the lid 17 is securedrelative to the container 15 is one possible source of lack of constancyin the light exposure from one measure to another. However, if thecontainer 15 is symmetrical around the axis of the lid 17, including thereflectivity characteristics of the inner wall, such as in thecylindrical shape shown in FIG. 1, the effects of the relativeorientation of the lid 17 relative the container 15 can be negligiblesince the measure would likely be the same at any radial orientation. Inany event, means such as mechanical locks or indications can be used toassist the user in positioning the lid 15 repeatedly in the correctposition if desired, or the emitter 12 and detector 22 can be positionedclose to the center of the lid to minimize undesirable effects ofvariations in radial orientation, for instance.

A horizontal marking, for instance, can be provided on the inner face ofthe contour wall 14 to provide an indication assisting the user inselecting the correct level of the sample 11 and thus providing aconstant volume of the sample 11 in the system, if useful in view of theintended application of the specific embodiment.

Since the conditions of the measures can be made constant as discussedabove, a biomass calibration curve of the system 10 can be obtained bytesting a plurality of samples each having a different biomass oforganisms of a known type, quantity and maturity, but maintaining allother parameters constant (such as volume of the sample and turbidity ofthe water medium). The detector 22 will obtain an intensity readingwhich will vary depending on the known organism quantity/biomass, whichallows to draw the biomass calibration curve. Experiments have shownthat the calibration curve can often be closely reproduced with amathematical formulae in which the intensity is simply a variable, forinstance. An empirical correlation table can alternately be used, forinstance.

Once the biomass calibration curve has been obtained, using the systemwith the same sample volume and same water medium turbidity will yield agiven intensity from which an unknown quantity of a given type andmaturity of organism can be deducted using the calibration curve. Sincemany organisms can be characterized as having an average mass whichvaries from individual to individual within a limited extent, thebiomass deducted can be equated to an estimated number of individuals.The intensity measurement can be taken in a specific spectral band, inthe visible spectrum or any other satisfactory portion of the spectrum,or more generally with a broader spectrum such as white light, forinstance.

One variable which may reduce the accuracy of the measures is thevariance in the turbidity of the liquid medium. One way to correctfuture readings as a function of the turbidity is to first take ameasure of a sample having only the liquid medium, i.e. withoutorganisms. The attenuation will be affected by the turbidity and so thedetected intensity will include an indication of the turbidity level.Knowing the turbidity level, the system can be calibrated to select thecorrect calibration curve, i.e. the calibration curve corresponding tothe actual turbidity level.

The system can also include further features to be specifically adaptedto obtain other information about the sample, such as turbidity of thewater medium for instance. Similarly to that which is described above, aturbidity calibration curve can be obtained by using the system with aplurality of samples each having a different turbidity of the watermedium, but other parameters being constant. In the specific exampleshown in FIG. 1, for instance, the system has two separate emitter 12,28 and detector 22, 30 pairs, each corresponding to distinct wavelengthbands. More accurate results can be obtained by using wavelengths whichreact more specifically to the organisms, or the medium in the sample11. For instance the wavelengths of red and blue will react differentlyin the water medium and can be used to obtain satisfactory results.Alternately, green and blue was found to be a good combination todistinguish attenuation from organic and non-organic sources. This canbe achieved with appropriately selected LEDs and appropriately selecteddetectors, optionally with filters, for instance. Typical LEDs can emitin a wavelength band on the order of 20 to 40 nm, whereas filters can beused to filter frequencies which are not in a band of the order of 10 to20 nm, for instance. Alternately, in embodiments where energyconsumption is less of an issue, lasers with diffusing lenses can beused instead. From the above, it will be understood that in alternateembodiments, the system can be adapted to obtain information concerninga variable concerning an inorganic source, such as sediments, in aliquid medium, for instance.

A three dimensional calibration curve (surface), or double correlationtable set, can be obtained by using the system with a plurality ofdifferent amounts of shrimp, for each of a plurality of differentturbidity levels. This curve can be accessed by using two differentintensity data, such as intensity of reflected red and ratio of red andblue reflected intensities, for instance, to obtain information on thebiomass of a sample having a water medium of unknown turbidity level.Taking the turbidity level of the water medium into consideration, orother influential variables, can help providing a better accuracy of thebiomass estimation. In alternate embodiments, other wavelengths can beused. In alternate embodiments, a separate turbidity sensor can be usedto obtain a turbidity reading and thereafter address the correctcalibration curve, for instance. It will also be noted here that the useof two wavelengths can also provide other uses than determining theturbidity of water, such as determining an ratio of live feed relativeto fish for instance, or determining the presence of parasites forinstance.

In the specific embodiment described in FIG. 1, the system has two LEDlights of different spectral emission band (blue and green) and twodetection units, all installed through the tank lid 17. The detectionunits can be made of a photodiode and a driver circuit to optimize noisereduction and signal stability. The LED lights illuminate the tankuniformly through diffusing lenses. Since the tank is opaque andsubstantially light-hermetic, the illumination comes virtuallyexclusively from the LED sources. The detecting units each have abandpass filter corresponding to the spectral emission of one of theLED. Light energy returned by the tank bottom that passes through thebandpass filter is converted into a voltage which is then recorded by abasic datalogger system. To keep the output power of the LED constant afan unit can be installed to cool down the system. A datalogger unit cantransmits the voltage intensity data for direct processing by anoptional internal processor 32 or by an external computer connected viaa port (not shown), for instance, or to a memory card 34 in an optionalmemory card port for instance, for subsequent access.

The tank lid 17 can be removed to add water and marine organisms intothe tank/container 15 for counting. These operations can also be donethrough a trap on the cover, or on the side of the container, forinstance. The lid is thus optional. Optionally, a mirror can be used onthe bottom and/or wall of the bucket to increase the amount of reflectedlight which passes twice across the sample, and thereby improveaccuracy, for instance.

It will be understood that the system can be used to obtain informationon various types of organisms or particulate matter, and it will bespecifically noted that the system can be particularly adapted forobtaining information on the biomass of shrimp, live feed, such asartemia and rotifers, fish larvae, and shellfish larvae for instance, oreven smaller organisms such as blood cells for instance in which casethe system can be scaled to a smaller size. For example, FIG. 2 providesan example of a calibration curve which allows to roughly equate theattenuated intensity to an amount of rotifers per ml. Inorganic ororganic particulate matter can also be characterized in a manner similaras that described above for characterizing turbidity, for instance.

Finally, it will also be understood that the system can also be scaledto larger sizes, and an alternate embodiment can be specifically adaptedfor land-based aquaculture in a reservoir which can contain largebiomasses of fish in thousands of liters of water medium, or open seacage applications, for instance. In embodiments where the sample cannotbe shielded from ambient light, an ambient light detector and/or afilter arrangement can be used to help discern the influence of theambient light from the useful intensity measurement.

Another example of information which can be obtained is the size ofmarine organisms, or other relevant variables of interest, using fieldof view ratios. A particle forward scattering phase function (FSPF)varies in function of the size of the particle; the bigger the particlethe more it will reflect light in the forward direction. Smallerparticles tend to distribute light uniformly in all directions.Therefore by recording information about the FSPF, it is possible toobtain information about the size of the particles in the water.Different fields of views can be obtained using two or more detectorseach having for instance a CCD lens which can be adjusted to measure theintensity of reflected light at two or more corresponding fields ofviews. The FSPH of particles can be obtained by recording the ratio ofreflectance between the light intensity recorded at narrow fields ofviews (ex. 10 degrees) and at large fields of views (ex. 20 degrees).Since marine organisms are free floating in a body of water, they behavelike particles and this ratio of narrow to wide field of view can becorrelated to an average size of the marine organisms present in thewater tank. If more than two fields of views are used, it is possible toprovide a size distribution function of the marine organisms. Using thistechnique one can generate as many size categories as there are fieldsof view ratios available.

The method used for the development of algorithms can link dataconcerning light measurements recorded by the system to the variables ofinterest (VOI) such as the number or size of organisms in the water orconcentrations thereof. Two levels of algorithms can be used, includingthe calibration algorithms for external variables, and the processingalgorithms to convert recorded data into meaningful information.

First, a standardization of the resulting light measurements forgeometric and radiometric external variables of the system can be used.In fact, factors like the internal temperature of the system or humiditylevel can influence the output power of the laser or LED sources andimpact light measurements. To maximize the accuracy of the processingalgorithms, the influence of these external variables must be removed.

Calibration curves for external variables can be generated in laboratorythen algorithms are developed and integrated into a computer program.This program automatically corrects the effects of the externalvariables on light reflectance measurements recorded by the system. Foraquaculture applications, correction algorithms can be generated for thefollowing external variables: light beam divergence; the distancebetween the light sources and the investigated specimens/sample, theinternal temperature of the system, the humidity level, the water level,the optical properties (turbidity) of the water.

For each variable, an experiment can be conducted to assess itsinfluence on the light reflectance measurements recorded by the system.The experiments can consist of measuring the reflectance of a whitecalibration target under different conditions specific to the externalvariable investigated. Correction algorithms are generated for theexternal variables that affect the light reflectance measurements by anorder of magnitude equal to or higher than the accuracy of the system.

Similar to the previous external variable calibration process,laboratory experiments are conceived to establish correlations betweenthe corrected reflectance measurements recorded by the system and theVOIs. During this second level of algorithm development, a function foreach VOI is characterized. For example, the increase in live feedconcentration may linearly decrease the light intensity measurementswhereas the relationship between reflectance and a number of halibutlarvae may be exponential.

Turning now to FIG. 3, another embodiment of a system 50 which can beused for obtaining information on a sample 52 of marine organisms in awater medium. In this particular example, the marine organisms are fishand the water medium is a volume of water present in an open ocean cage53. The open sea cage is permeable to water so water flows through it asthe volume remains relatively constant.

In this particular example, the emitter can be entirely omitted and thesystem can function based only on ambient light 54 (sunlight), forinstance. More particularly, an ambient light detector 56 (which can bea pyrometer optionally with adapted filters) is positioned on top of theopen ocean cage 53, and is oriented toward the sky. Its field of viewshould be wide enough so that it can remain substantially unaffected bythe punctual presence of a cloud directly above it, for instance. Thesunlight is transmitted into and across the sample 52 as it becomesattenuated. At least one detector 58 is provided under the water surface60 in a path of the light which is affected by the presence of the fish.The reading of the attenuated light intensity detector 58 will be lowerthan the reading of the initial ambient light intensity because of theattenuation which takes place during transmission across the sample. Theattenuated light intensity is a factor of the ambient light intensity(sunlight intensity), the biomass of fish in the cage, and the turbidityof the water medium. The ambient light intensity factor can be removedfrom the equation by knowing the initial intensity value, which can beachieved with the ambient light. Knowing the turbidity level can allowto remove the turbidity factor from the equation. Then, the attenuatedlight intensity measured by the detector(s) 58 can be used to obtain anindication of the biomass by using a previously obtained calibrationcurve. Determining the biomass of fish in the cage in real time can beparticularly useful in obtaining an indication of the approximate amountof feed which should be provided.

Generally, using a greater number of detectors can allow improving theaccuracy of the system and can also allow to access more information.For instance, the turbidity of the water can be detected by using adetector which is underwater, but which is in a path of the sunlightwhich is substantially out from interference from the interaction withthe fish. Once the factor of initial light intensity is taken out of theequation using the information obtained using the ambient light sensor,the detected intensity can be directly linked to turbidity using anappropriate calibration curve, and the reading from a detector at thebottom of the cage can then be correlated to a biomass of fish in thecage.

One specific use which can be particularly advantageous is to assist indetermining the right moment to stop providing feed to fish in the opensea cages. One way to achieve this in a manner potentially moreefficient than by simply analysing data from one or more detectors at agiven point in time, can include obtaining data from one or moredetectors at a regular rate over a given period of time. For instance,readings can be obtained at a rate in the order of a twenty intensitymeasures per second. When feeding, the fish will move at a given averagespeed. The effect of the movement of the fish on the intensity measureswill be that the intensity measures will fluctuate at a given rate. Byanalysing the readings, one can identify the frequency of variations inthe intensity signal corresponding to the movement of the fish. Once thefish are satisfied, they will tend to remain at the surface of the waterfor a given period of time and continue to move at a given rate, butthey will no longer consume all of the feed. Typical feeding pellets cansink at a rate in the order of 4 inches per second. Upon approaching thedetector(s), the sinking pellets will create intensity fluctuations at afrequency peak which will be significantly different from the frequencypeak due to the fish movement. Analysing the intensity variationspectrum can allow to detect the occurrence of the frequency peakassociated with the occurrence of sinking pellets. The system can beprogrammed so that a user is alerted to slow, or stop conveying the feedonce predetermined thresholds of the frequency peak associated with theoccurrence of sinking pellets are detected.

More specifically, this method can be referred to as deconvolutionsignal analysis to characterize different variables of interestmonitored with the system. By correlating a variable to a range offrequencies within the electronic signal generated by the photodetector, it is possible to isolate its corresponding light attenuationvalues.

Since a frequency is the number of occurrences of a repeating event perunit time, we can classify variables as lower or higher frequencyparameters. The case of discriminating attenuation values specific tofish swimming in an aquaculture cage and attenuation values specific tofeed pellets being thrown in the aquaculture cage to feed the fish isone example where this can be done. Feed pellets sink down the cage at aconstant rate in the order of 4 inches (˜10 cm) per second depending onthe type of feed, and therefore stay in the field of view of the sensorfor a considerable amount of time. Salmon swim at an average speed inthe order of 20 inches (˜50 cm) per second and are thus subject to rapidchanges in direction. Subsequently, with XpertSea system, feed pelletssinking down the cage are recorded at a lower frequency than fishswimming randomly in the water.

FIGS. 4A and 4B illustrate a specific example where this method was usedto isolate the attenuation values specific to the feed pellets and thefish using the signal deconvolution method. The signal on top of FIGS.4A and 4B is the raw waveform recorded by the system while fish werebeing fed in an aquaculture cage. A Discrete Fourier Transform wasperformed on the raw waveform to characterize the amplitude of eachfrequencies present within the signal. In FIG. 4A, a low pass filter wasapplied to the transform (illustrated as the bottom signal of FIG. 4A)to remove frequencies higher than 2 Hz. The resulting values expressedin the middle row of FIG. 1 are specific to the light attenuation causedby the feed pellets.

The same process was applied to FIG. 4B, however instead of a low passfilter, a high pass filter was applied to erase all frequencies lowerthan 2 Hz and only keep higher frequencies between 2 Hz and 10 Hz. Thevalues illustrated in the middle row of FIG. 4B are thus specific to thelight attenuation caused by the fish swimming in the water. The sameprocess could be applied once again to the higher frequencies todiscriminate between the variance induced by the fish and the signalfluctuation caused by a high frequency electrical noise.

A similar process can be used to identify a level of activity of thefish (which can be correlated to health level), identifying a predatorin the cage, determining the size distribution of the population, etc.

Other useful information can be obtained by tracking the intensityvariations over a period of time. For instance, reliable data that canbe correlated to various variables of interests such as fish orshellfish counts and size, involves collecting a large amount of values.In fact, since marine organisms swim around in the water body, manymeasurements can be required to obtain a truly representative samplingof the specimens. For example, fish tend to overlap and form clusters.When the final ratios or light intensity values are not based on singlemeasurements but rather on the average of hundreds of data collectedover a fix interval of time, the variations among the individual datacollected during that interval of time can provide information about thebehavior of the marine organisms in the water. If data are recordedevery second for 5 minutes, 300 individual values are generated. If thefish are not active during this five minute interval, the variationwithin the 300 values is minimal. On the other hand, if the fish arefeeding, their random motion generates high variations in the data set.In the end, the mean value of the two data sets is similar; howevertheir standard deviation value differs greatly. Using this technique,one can correlate the standard deviation value of a data set to thelevel of activity of the marine organism population.

To obtain a better accuracy and/or versatility, the readings can betriggered by light emitted within a spectrum which can be centered onone or more predetermined wavelengths, rather than using simply directsunlight. For instance, direct sunlight may be unavailable on a verycloudy day where readings are desired. In embodiments which use emittedlight and which are subjected to ambient light, it can be useful, andperhaps even essential, to use an ambient light detector to obtain anindication of the ambient light contribution to the detected intensity,and to allow correcting the detected intensity accordingly.

In embodiments where direct sunlight is used as the light source, theambient light intensity is one variable which can be taken intoconsideration with an appropriate calibration algorithm.

Generally, the larger the open ocean cage is, the greater the amount ofdetectors and optionally emitters are required to obtain satisfactoryaccuracy representative of the entire open ocean cage.

In a specific embodiment, the detectors are connected individually tothe opto-electronic unit using a marine grade wire to allow forstrategic positioning throughout the cage. Also, using lasers as thelighting source may be an issue due to the limited power availability atthe location of the cage. The alternative is using LED lamps that emitat specific spectral bands (such as green and red for instance). The LEDlamps can be durable, low cost and energy efficient. Using LED lamps,the entire system (light sources, detectors and datalogger) can bepowered using a 12 VDC battery which is recharged using a waterproofsolar panel. One strategy to reduce energy consumption is to takereadings only at certain periods in time, such as each hour forinstance, which can also prevent the attraction of photo tacticparasites on any emitters. A power supply and electronic unit can besecured in a rugged waterproof casing which floats on a raft attached toa buoy. It can be advantageous to provide an open sea system whichcollects a relatively small volume of the data which be transferredwirelessly. Cages can be spherical or barrel shaped for instance. Ifused, light sources can be strategically positioned around the cagestructure. In embodiments where the diameter of the cage is very long(such as more than 10 meters for instance) installing the light sourceson a center axle of the cage can be preferable. The detectors can bemade of one, two or more detection units which are enclosed inwaterproof casings having a glass or acrylic front window which allowsenergy from the light to reach the active area of the photodiodes. A CCDlens, a photodiode, and an electrical circuit board (for signalamplification and noise reduction) can be part of the detection unit. Areflective panel can also be installed to collect light moreeffectively. Laser line filters or broad band filters can be added ifLEDs of different spectral bands are used. A water proof connector canallows the power and signal wires to connect to the electrical circuitboard to the opto-electrical unit. Light sources can be turned onsimultaneously or individually to measure transmittance andbackscattering of light. The number of light sources can range from oneto ten or more depending on the size of the cage and the emitting powerof the lights. Light sources can be installed around the cage structureon a central hub. Using the data generated by different combinations oflight sources and detectors, along with statistical parameters,reference values and calibration of external variables, severalvariables of interests can be measured.

For instance, some detectors can be placed at 0 degrees and 180 degreeswith respect to the light sources. This makes possible the monitoring ofthe light backscattered by the fish (0 degrees) and the lighttransmitted through the fish population (180 degrees). As the number offish in the cage increases, the amount of backscattered light todetector at 0 degrees also increases but the quantity of light thatmakes it to detector at 180 degrees decreases. Using the ratio ofbackscatter to transmitted light, one can approximate the quantity offish in the cage. However, this ratio of backscatter to transmittedlight will also be affected by the size of the fish. Therefore, in orderto develop an accurate algorithm for fish quantity, the sizedistribution of the fish population needs to be known.

Another example is using the forward scattering phase function (FSPF) ofparticles to obtain information about the size of the particles in thewater. This can be achieved by placing detectors at different viewingangles all around the cage (0, 45, 90, 135, and 180 degrees). Withoutany fish in the cage, a constant light intensity is recorded by thesensors as a function of their distance and angle with respect to thelight sources. However, as fish are introduced in the cage, scatteringof the fish will happen as a function of the size of the fish. When fishare small, light will be scattered uniformly around the cage. However,as the fish increase in size, the larger specimens will generate moreforward scattering to the detectors located at the opposite of the lightsource. Therefore, one can determine the size distribution of the fishpopulation within the cage by looking at the ratio of light intensityrecorded by the detectors at different angles with respect to the lightsource.

In still another example, the infection of fish populations in cages byparasite or a viral disease can be monitored using the system if theinfection induces changes in the physical properties of the fish surfacesuch as changes in pigmentation or texture. For example, in ocean cagefarming settings, sea lice can be a severe issue. When the sea licecopepods find a fish host, they develop into adult parasites that attachthe fish skin. If sea lice are infecting the fish population within thecage, the intensity of green backscattered light will decrease since thepigmentation of the sea lice organisms absorbs the green spectrum oflight. However, the pigment characteristic of the sea lice tissues doesnot absorb as much light in the red spectrum. Therefore, an unusualdecrease in the green to red backscattered light intensity ratio can becorrelated to a change in fish skin pigmentation caused by sea liceinfection.

Also, still using two wavelengths of emitted light, it is possible todetermine the turbidity of the water using the ratio of green to redlight measured by the detector at 180 degrees. In fact, the lightreaching the detector at 180 degrees made it through the fish populationmainly without being scattered by the fish. Therefore, the onlyattenuation experienced by this light comes from the water and the smallsuspended particles. Since green light is more absorbed by suspendedparticles than red light, a high ratio of green to red transmitted lightindicates a low concentration of the suspended particle. On the otherhand, a low ratio of green to infrared transmitted light indicates ahigh concentration of suspended sediments. This high concentrationsuspended particles can be correlated to events such as algal orparasite blooms or pollution events.

As can be understood now, the examples described above and illustratedare intended to be exemplary only. The scope is indicated by theappended claims.

What is claimed is:
 1. A photo-coupled data acquisition systemcomprising a container having a contour wall extending upwardly from aclosed bottom, for containing a sample therein, a light emitter operableto emit diffused light into the container at an initial intensity, aphotodetector operable to detect a reflected intensity of the diffusedlight reflected by at least one of the sample and the container acrossthe sample, and a structure connected to the contour wall and holdingthe light emitter and the photodetector at a predetermined height abovethe bottom of the container and in an orientation facing inside thecontainer, the contour wall and the bottom being part of a bucket havingan open upper end, the structure being formed by a lid securable to theopen upper end of the bucket, and to which both the light emitter andthe photodetector are mounted, the contour wall, bottom, and lid beingopaque to prevent intrusion of ambient light inside the container, andthe inner face of the contour wall and bottom being reflective to thediffused light, wherein during operation of the system, the initialintensity is attenuated by the sample in a manner that the reflectedintensity can be correlated to an information value concerning avariable of interest of the sample.
 2. The photo-coupled dataacquisition system of claim 1 further comprising, a memory to storecalibration data, and a processor operable to correlate the reflectedintensity to the information value using the calibration data.
 3. Thephoto-coupled data acquisition system of claim 2 further comprising avisual indicator; wherein the sample has a plurality of organisms in aliquid medium, and the processor is operable to display a quantity oforganisms on said visual indicator, said quantity of organisms beingdetermined based on said comparison.
 4. The photo-coupled dataacquisition system of claim 2 further comprising a data storage portaccessible by the processor for storing reflected intensity data.
 5. Thephoto-coupled data acquisition system of claim 1 wherein the containerforms a closed sample volume shielded from external light.
 6. Thephoto-coupled data acquisition system of claim 1 wherein the contourwall has a cylindrical shape extending upwardly from the bottom.
 7. Thephoto-coupled data acquisition system of claim 1 wherein thephotodetector is a first photodetector operating within a firstwavelength band, further comprising a second photodetector operatingwithin a second wavelength band distinct from the first wavelength band;wherein the processor is operable to obtain independent informationvalues concerning different values of interest of the sample using thetwo wavelength bands.
 8. The photo-coupled data acquisition system ofclaim 1 wherein the light emitter is a first light emitter operatingwithin the first wavelength band, further comprising a second lightemitter operating within the second wavelength band.
 9. Thephoto-coupled data acquisition system of claim 1 wherein the contourwall has a horizontal marking corresponding to a predeterminedcalibration volume of the liquid medium.
 10. A photo-coupled dataacquisition system comprising a container having a contour wallextending upwardly from a closed bottom, for containing a sampletherein, the sample having given volume of liquid medium, the samplehaving a surface which reaches a sample level in the container, a lightemitter operable to emit diffused light and to diverge the diffusedlight into the container at an initial intensity, a photodetectoroperable to detect a reflected intensity of the diffused light reflectedby at least one of the sample and the container across the sample, and astructure connected to the contour wall and holding the light emitterand the photodetector at a predetermined height above the given leveland in an orientation facing inside the container, wherein duringoperation of the system, a spacing is present between the light emitterand the given level of the sample, the spacing allowing divergence ofthe diffused light onto the surface of the sample at the sample leveland wherein the initial intensity is attenuated by the sample in amanner that the reflected intensity can be correlated to an informationvalue concerning a variable of interest of the sample.
 11. Aphoto-coupled data acquisition system comprising; a container having acontour wall extending upwardly from a closed bottom for containing asample therein, the sample having a plurality of organisms in a liquidmedium; a light emitter operable to emit diffused light into thecontainer at an initial intensity; a photodetector operable to detect areflected intensity of the diffused light reflected by at least one ofthe sample and the container across the sample; a structure connected tothe contour wall and holding the light emitter and the photodetector ata predetermined height above the bottom of the container and in anorientation facing inside the container, wherein during operation of thesystem, the initial intensity is attenuated by the sample in a mannerthat the reflected intensity can be correlated to an information valueconcerning a quantity of organisms of the sample; a memory to storecalibration data; a processor operable to correlate the reflectedintensity to the information value using the calibration data; and avisual indicator; wherein the processor is operable to display aquantity of organisms on said visual indicator, said quantity oforganisms being determined based on said correlation.